Five decades after President John F. Kennedy was fatally shot and long after official inquiries ended, thousands of pages of investigative documents remain withheld from public view. The contents of these files are partially known -- and intriguing -- and conspiracy buffs are not the only ones seeking to open them for a closer look.

Some serious researchers believe the off-limits files could shed valuable new light on nagging mysteries of the assassination -- including what U.S. intelligence agencies knew about accused assassin Lee Harvey Oswald before Nov. 22, 1963.

It turns out that several hundred of the still-classified pages concern a deceased CIA agent, George Joannides, whose activities just before the assassination and during a government investigation years later have tantalized researchers for years.

"This is not about conspiracy, this is about transparency," said Jefferson Morley, a former Washington Post reporter and author embroiled in a decade-long lawsuit against the CIA, seeking release of the closed documents.

Morley's effort has been joined by others, including G. Robert Blakey, chief counsel for a House investigation into the JFK assassination in the 1970s. But so far, the Joannides files and thousands more pages primarily from the CIA remain off-limits at a National Archives center in College Park, Md.

Others say the continued sealing of 50-year-old documents raises needless questions and encourages conspiracy theories.

"There is no question that in various ways the CIA obfuscated, but it may be they were covering up operations that were justifiable, benign CIA operations that had absolutely nothing to do with the Kennedy assassination," said Anthony Summers, a British author on the assassination.

"But after 50 years, there is no reason that I can think of why such operations should still be concealed," Summers said. "By withholding Joannides material, the agency continues to encourage the public to believe they're covering up something more sinister."

To understand the attention to the Joannides files, it's necessary to go back to 1963 and to review what's known about Oswald that put him on the CIA's radar.

Oswald was a loner and an enigma. Still, plenty was learned about Oswald after the shooting in Dallas. And, it's now clear, he was not unknown to the U.S. government before that.

Assassination investigators learned that Oswald had formed a group in New Orleans in the summer of 1963 that ostensibly supported Cuban leader Fidel Castro (Oswald was the only local member) and had been involved in a street altercation with anti-Castro demonstrators that was captured by a local television station.

But researchers believe that Oswald may have been part of a counterintelligence operation to discredit the group he had joined, the Fair Play For Cuba Committee, and that the street scene was a setup.

If so, who would have overseen such an operation?

Declassified documents show that Joannides, while based in Miami, was the CIA case officer for the anti-Castro Student Revolutionary Directorate (DRE), the group involved in the street fracas with Oswald.

What did this all add up to, if anything? Official investigations of the Kennedy assassination were not able to provide complete answers.

The Warren Commission, which concluded in 1964 that Oswald acted alone, was never told about the CIA's possibly relevant anti-Castro activities.

Warren Commission staff counsel Burt Griffin, now a retired judge, calls it "an act of bad faith" by the CIA.

Panel's 'conspiracy' theory

The House Select Committee on Assassinations convened in the mid-1970s to probe the Kennedy and Martin Luther King Jr. killings. Its JFK conclusion: That sound impulses recorded on the microphone of a Dallas police officer amounted to evidence of a shot from the infamous "grassy knoll" in Dealey Plaza, and thus of an additional gunman besides Oswald firing from a building window.

Kennedy, the committee's final report said in tempered language, was "probably assassinated as the result of a conspiracy. The committee is unable to identify the other gunman or the extent of the conspiracy."

Subsequent analyses have cast doubt on the acoustic evidence, and the issue is considered unresolved.

That evidence was, of course, only part of the mountains of material considered by the committee, some of it from the CIA. And the CIA's liaison to the committee was none other than George Joannides, by then retired from the agency.

Blakey, the committee's chief counsel, recalled how the CIA brought in Joannides to help fill requests for documents made by committee researchers. "He was put in a position to edit everything we were given before it was given to us," Blakey said.

But Blakey didn't learn about Joannides' past until Morley unearthed it in files declassified years later.

"If I'd known Joannides was the case officer for the DRE, he couldn't have been liaison; he would have been a witness," Blakey said. He added: "Do I think I was snookered, precisely like the Warren Commission was? Yes."

Records still withheld

Which brings us back to the still-secret investigative files -- about 300 pages of which relate to Joannides. First, some background:

Certain files held by the Warren Commission and House Select Committee were originally ordered sealed well into the 21st century. Decades passed before public pressure spurred by Oliver Stone's 1991 film "JFK" changed that.

Congress in 1992 established the Assassination Records Review Board, to carry out release of records related to the assassination. As a result, about 5 million pages of documents have been released and are available for review at the National Archives and Records Administration in Maryland.

But the review board agreed to withhold about 1,100 records -- each record consists of 1 to 20 pages -- that are considered to contain information about confidential sources or methods or have national security implications.

The 1992 JFK Act required all records to be released by 2017, but it allowed agencies to petition to have records withheld if disclosure would compromise "military defense, intelligence operations, law enforcement, or conduct of foreign relations."

It is unknown whether the CIA will try to keep some documents classified past 2017.

A CIA spokesman, Ned Price, said the agency has complied with the law and that "the classified information contained in the files remains subject to the declassification provisions of the Act."

Among those are the Joannides files. An index created by the CIA and provided to the AP by Morley describes many of the files as containing information on Joannides' travel, training and personnel evaluations as well as memos pertaining to the CIA's interactions with the House Select Committee on Assassinations.

Morley does not suggest the Joannides files point to agency involvement in the assassination itself, but more likely that their release would show the CIA trying to keep secret its own flawed performance before the assassination.

"The idea that Lee Harvey Oswald was some unknown quantity to CIA officers was false," Morley said. "There was this incredible high-level attention to Oswald on the eve of the assassination."

Assuming that Oswald fired the fatal shot, he said, "These top CIA case officers are guilty of negligence."

Blakey isn't optimistic about getting all of the documents from the intelligence agency. "Why are they continuing to fight tooth and nail to avoid doing something they'd promised to do?" he said.

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